Repository: https://github.com/4DNucleome/PartSeg
PyPi https://pypi.org/project/PartSeg/ so partseg can be installed with pip install PartSeg
Documentation latest
Paper: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-03984-1
Authors: Grzegorz Bokota, Subhadip Basu, Nirmal Das, Paweł Trzaskoma, Agnieszka Grabowska, Jacek Sroka, Adriana Magalska, Dariusz Plewczyński
PartSeg version 0.15.1 updated: (2023.08.09)
Windows binaries: link
MacOS binaries: link
Linux binaries: link - tested on ubuntu 18.04 (first start may take long)
Release history link
TEM example data link
SEM example data link (87 MB)
Confocal example data link (197 MB)
Tutorial: Chromosome 1 (as gui) link
Data for chromosome 1 tutorial link
Tutorial: Different neuron types (as library) link
This plugins are avaliable only when using PartSeg as package
Cellpose pip install PartSeg-cellpose link
Stardist pip install PartSeg-stardist link